Guide
How to get rid of black algae in a pool
Updated October 8, 2026
Written by Richard Ellis, Certified Pool Operator
Short answer
Black algae roots into the pores of plaster and grows under a protective outer layer, so shock alone will not kill it. Brush every spot hard with a stainless steel brush to break that layer, put chlorine directly on the spots, shock the pool after dark, and keep brushing daily until the spots stop coming back.
Black algae is the stubborn one. Green algae clears in a few days. Black algae can look dead after a shock and be back in the same spots two weeks later, because the part you can see is not the part that matters. Here is how it works and how to actually finish it off.
What is black algae in a pool?
Black algae is a hardy type of algae, really a cyanobacteria, that shows up as raised dark blue or black spots from pinhead to coin size. It grows in grout lines, rough plaster, shady corners and steps. The top layer is tough enough to shrug off normal chlorine, and the roots grow into the pores of the plaster, which is why it comes back.
What causes black algae in a pool?
It gets carried in, then takes hold where chlorine is weak. Swimsuits, floats and toys used in lakes, canals or the ocean can bring it in. It takes hold where chlorine runs low, circulation is poor, or the plaster is rough enough to give it somewhere to grip. Older plaster is especially prone to it.
How do you treat black algae in a pool?
Break the protective layer, then hit it with chlorine, and repeat. Brushing is not optional with black algae. Shock without brushing kills the top and leaves the roots.
- Brush first. A stainless steel brush on plaster, a nylon brush on vinyl or fiberglass.
- Put chlorine directly on the spots. On plaster, many pool techs rub a chlorine tablet straight onto each spot after brushing. Never do that on vinyl or fiberglass.
- Shock hard after dark with the pH lowered to about 7.2, and run the filter around the clock.
- Brush the spots every day for at least a week.
The numbered steps are below. Treat the chemicals with respect while you do it: the CDC is clear that pool chemicals go into the water one at a time and are never mixed.
How long does it take to get rid of black algae?
Usually one to two weeks of daily brushing and steady high chlorine. The spots often fade in a few days, but if you stop then, the roots grow back. Keep going for a week after the last spot disappears. If the whole pool has turned green on top of the black spots, a green pool cleanup clears the water first.
Can you swim in a pool with black algae?
Not while you are treating it. The chlorine will be far above swimming level, and a pool losing to algae is a pool where the chlorine is not keeping up. Swim again once free chlorine has dropped back to 5 ppm or lower, which is covered in how long after shocking can you swim. And wash any swimsuits used in it before they go in another pool or lake.
Can you pressure wash black algae in a pool?
Not with the pool full, and pressure washing drained plaster is a good way to damage it. In a drained pool, black algae that has rooted deep is a job for an acid wash, which takes off the thin surface layer the algae lives in. That is why an acid wash is often the clean break for a pool that has fought black algae for years.
How do I keep black algae from coming back?
Steady chlorine, regular brushing and clean gear.
- Keep chlorine steady. At least 1 ppm, or 2 ppm with stabilizer, per the CDC.
- Brush the walls, steps and corners every week, especially the shady ones.
- Wash swimsuits and toys that have been in a lake, canal or the ocean.
- Keep the filter clean and the pump running long enough. See how often to clean a pool filter.
Brushing the walls and steps is part of every weekly pool service visit for exactly this reason.
Can black algae grow in a salt water pool?
Yes. A salt water pool is still a chlorine pool, and black algae takes hold anywhere the chlorine dips or the circulation misses a corner. Salt pools get it too, often when the cell output drops in summer. More in salt water vs chlorine.
How to kill black algae
- 1
Balance the pH
Lower the pH to about 7.2 so the chlorine works at full strength.
- 2
Brush every spot hard
Scrub each spot until the dark top layer breaks. This is what lets chlorine reach the roots.
- 3
Treat the spots directly
On plaster, rub a chlorine tablet onto each spot after brushing. On vinyl or fiberglass, skip this and rely on the shock.
- 4
Shock after dark
Add a heavy dose of shock in the evening so the sun does not burn it off.
- 5
Run the filter nonstop
Keep the pump running around the clock and clean the filter once the dead algae has been caught.
- 6
Brush daily for a week or more
Keep brushing the spots every day and keep chlorine high until a week after the last spot is gone.
Quick answers
- Why does black algae keep coming back?
- Because the roots in the plaster survived. Brushing hard enough to break the top layer and keeping chlorine high for a week after it disappears is what finishes it.
- Does an acid wash get rid of black algae?
- Usually, because it removes the surface layer the algae is rooted in. Keep chlorine steady afterward or it can take hold in the fresh plaster too.
- Is black algae the same as black stains?
- No. Black algae is raised, rough and comes back after brushing. A flat dark stain that lightens with vitamin C is metal, often manganese from well water.
Sources
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